NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_100435

Scaffold Ga0208429_100435


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_100435 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6313
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048414Metagenome / Metatranscriptome148Y
F050483Metagenome / Metatranscriptome145N
F092366Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208429_1004351F048414GGAGGMNFEKLKENASVSLFYSFLLFVLSFIIVIAGLNYIWGKPALVWLPLSVWNLLITLGIFLSIMIILVVVARRLI
Ga0208429_10043510F050483AGGGGGMSYRLIKILRKDGTVKEVKVNPNSFNNEKVTIDNYDYYIPAQAVFEETKGLFFKKKIKTAYVIEGNPKPISWSTPDYSLDKILQSKIDSDLFNKLEKNKAELILWTILGSVIGLLLGFILGHDIFTNTNNYRIVRVVGVILWNLIR
Ga0208429_1004355F092366AGGAMKAIYVLFVALLFLIPITFNNSQASLLSGSSLINEKVNTHIQIYALNLSLPQAWGIYGYYNYSINNKNYSISISNLTDNYYLNLNISYEISLSVNTTLYYNITLYAYKLQDYIALNHLNYKGKLNLLTTQSEYNLTLNASAIQFENVNNFYYFWNQYGYKVIGSILIIGLFLFFISRLRRMR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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