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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027932 Open in IMG/M |
| Scaffold ID | Ga0208429_101074 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3699 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.7315 | Long. (o) | -110.7113 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008949 | Metagenome / Metatranscriptome | 325 | Y |
| F011097 | Metagenome / Metatranscriptome | 295 | Y |
| F045200 | Metagenome / Metatranscriptome | 153 | Y |
| F076262 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208429_1010742 | F045200 | GAGG | LSQGYITGEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLLWFGSPTGTTNEKPQFSVFYARVHPERYVPNAPAETWLDPPVLLVSYDQISRDVVSWADNVFTAAGYTPSSPGVVNVISGAEYIPNYGYVSYAYAPSTVTLNFTGTPELKQLHMVYDMLDDTVLMYFSIMVPNWNPVTKAQYVYKFPVSLLKSQRSINQYAVSGLTPTTTSTPPPNDRPYFLGGLKFDNTVEQTLGNGLGEAWNNSVQYQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYGISALGTNYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITSSGLSVPAFNGLPENLGSCPSSYGGNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYIIPITVLLRPDWGGISSMRMKMLYVAPIFHQFEGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYYADNYIDGVAVYLDKTVVSPKGKTLVATPSLIFGQTSSGGSYYVVTVYNFYAAVYHGVVTYTFGKKYARVYLNMNANNSGFVNIYTRYRSSSAPDLQQVYGNSPNSNNTFTYYTPVGGNIGTLVYLSDYSYVMPYEASYARTSKFRVDGQVLWVITTNNYGTSDVWVELDGD |
| Ga0208429_1010743 | F011097 | N/A | MVTKMMRDFPLYTSGGTDAFTGLPIGGSPITSGSYNYQLLRFHPNYARVHIYVTSLSGTSPSIQFTVGSYAGPIYYTLPTMTSPQYVYIIGNGNKTIITYLNTSNVVLQQVELPYNIFFNGAYVSWLVVGTSPSISAYIHFEYEDEEEGGE |
| Ga0208429_1010744 | F008949 | AGGAGG | MSSQTVQLGTQTITPKVQDLGNTYYIEFQVKITKYLNNPTNQTIDVKFVCNKYKQVVVPRTNPLSPPTVQTVQKTIQECVDEWYAQHKSVYEVA |
| Ga0208429_1010745 | F076262 | AGGTGG | VSFNPVIKGSYTLASPQTVSVVASGSATVSISFTPLGAGNLYVHITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITISNAGTTAASVTVWALFIEVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |