NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_101338

Scaffold Ga0208429_101338


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_101338 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3215
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F075084Metagenome / Metatranscriptome119N
F080245Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208429_1013381F061983N/AVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAISEGDGLFDCYYSDVIDVKKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAFETCTKFIM
Ga0208429_1013386F080245AGGALHGDKTVIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHILLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
Ga0208429_1013387F075084GAGVRPCQKDICLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVLTKMTEMCSTYEVR
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