NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_101391

Scaffold Ga0208429_101391


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_101391 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3151
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062912Metagenome / Metatranscriptome130Y
F077497Metagenome / Metatranscriptome117Y
F087443Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208429_1013913F062912N/AMDPSVILAETYNLFLVSDIIENESDIDKELEGLLADRDYNNMAKTIIYTLVYTVNNHLVYENIKQTYINDAIDLLYMVDRIGFDNERIMKKFIKLLYQFYSYSLQNRINFIADKEKREFVKAKLDELVSII
Ga0208429_1013914F087443N/AMGQRKNYWMNFLDSDNIDYIDKEITKTAVDLDLDPSEIRAWIFKAFIYDMEVKAKVIEYIKKNGQRPNQ
Ga0208429_1013915F077497N/AMDKDQISKIEEIIEKHLFEETSNTDYELKKMNAMIKYLIYQKLKDIDERLDNIDQTLYESANPGIWYDEK
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