NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_101825

Scaffold Ga0208429_101825


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_101825 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2642
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026606Metagenome / Metatranscriptome197Y
F045199Metagenome / Metatranscriptome153Y
F052043Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0208429_10182510F026606GGAGGMVENEYEKIEQKLEEFLGIESGELREKIIEKAVCLDKDYSRMVVLRIYPDGAYDIGIGQEGSYDGLSNDERLWVEFSLIEPWDLPEYETFAGVVGGYIDEDNGDVFDDDGLLDAVRTSVASGFYDKFEYEWKKFLKEFNDWFEGLEGE
Ga0208429_1018252F045199GGAMGSLLIKYDISDFIQKWESYMDDLLSQIEQQRKKNKNVQELIEIYKKMNFIDSKMLEILDISWGDENDDL
Ga0208429_1018255F052043GGAGMLEKSYQRLKEIISELDYIFKKGKLVLIKANGYDYVVSGYHISRDYILFYFGKDFLDAYHYLDIQEIKELM
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