NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_102182

Scaffold Ga0208429_102182


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_102182 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2364
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022017Metagenome / Metatranscriptome216N
F027904Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0208429_1021822F022017GAGMRAFNIYVYNYANADLSVQVIANENAKNYQYGALLDGLDYQSESSYPDFNVGSPVTVASGSLQQPGVQTVQADFYSTSAERYISLALTYSTAPTSGFVRAHIDLFYEGF
Ga0208429_1021825F027904GGTGGMEKYEPPEYDLFNLNNGGTAIGTSPASLLYEGQANAAVIVPPDLTLRVKQVIIQNATTSLITVQLLAVSTVSGAPTPIAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAVSSAANSANVFVKAYFVKGTGSPI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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