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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027937 Open in IMG/M |
| Scaffold ID | Ga0208151_100476 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16665 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (16.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.7219 | Long. (o) | -110.7021 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021808 | Metagenome / Metatranscriptome | 217 | Y |
| F062912 | Metagenome / Metatranscriptome | 130 | Y |
| F077497 | Metagenome / Metatranscriptome | 117 | Y |
| F090626 | Metagenome / Metatranscriptome | 108 | Y |
| F097670 | Metagenome / Metatranscriptome | 104 | Y |
| F099549 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208151_10047612 | F099549 | N/A | MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSSDTRTFDNEELKNKLRAAISYALGLLASTWGYSMSAKVQQDVLVAKNTLIALFDAIMINPELTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT |
| Ga0208151_10047618 | F077497 | N/A | MDKEQINKIEEITENHLFKEKNTPDYELKKMDVMIKYLIYQQLKELNNNLSLIDEALSIKELEK |
| Ga0208151_1004762 | F090626 | N/A | MSRIIKFENIYFGRNSLVKLFANKTHLENHADYDGTVLAFLLDVSDFTNTDTLLSHFAIINGNEIRPILVEWNLRTIHGRLLILLNQLPGTHDTKMLLKKFESAIENQKPEIVKYTASQYAKALTDAKGLRQIYNFLVQRIQQLKSIGIKRSEEEVKRLAEIYR |
| Ga0208151_10047620 | F062912 | N/A | MDLTEVLAETYNLFLVSDIIENGSEIDRELINLLANKDYNNIAKTLIYVLMHTLNNDPAYKNIRQIYINEVIDLLYMIDRIGFDNERIMKKFVNLLYQFYSYSLQYKINFITDKEKREWVKAELNELIHII |
| Ga0208151_10047635 | F021808 | N/A | MMTEEPSHGTIAWYFFEIDKKQRQIYELVFDIEQKLAKVKDLLNEIYILKAQLETNVNVGKI |
| Ga0208151_1004768 | F097670 | N/A | MNYKVFDKDIYTETDEIITINLKTGEIKHETKMYFYDEKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYIPISNIIYEFMLNKNNIVLIAYANISKVENEISKEITSDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNITKIIEKALKSAKAILKSNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |