NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_101738

Scaffold Ga0208151_101738


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_101738 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6128
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F008949Metagenome / Metatranscriptome325Y
F011233Metagenome / Metatranscriptome293N
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1017382F011233N/ALAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVPASPGFVAEEVVSAKLPVRVT
Ga0208151_1017383F006070AGGMTLYPYLVVDLPITDTNTHTYRTDPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANATLNVQVIANENAKNYAYGNLLDGLNYQSESGYPDFNVGSPVTVASGSLQQPSVQTVQADFYSTSAERYISLALTYSTPPSTGFIRAHIDLFYEGF
Ga0208151_1017386F008949GGTGGMSNQTVTLGTQTITPKVEDLGDSYYIEFQVKVSKYLNNPVNQTIDVKFMCSKYKVVTLQSPLTPNVQTLQKTIQECVEEWYNQHKSVYEVA
Ga0208151_1017388F023140GGTGGLKLHKRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLMLFFYFLGAKFVGIWAVLQKFSVTLPTSLVLTGLVEDVPRNPYLDYVVLFLVGYTISTPLIFLTYRVTRWLYDKKGRLNTPNL
Ga0208151_1017389F021133AGGTGGMTKRDDLIRQIYENGNYVIKRICEMEPKDKMANFSATDCIIGSANTHLALKIAREKGYPQDVIEYLESQSKQEQWHCQLHIGKSPKPYDFKVAQKHREILQKYGIYVWMGVMPLLGEKIALAKAVCWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIVELQKEYIERIFNLS
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