NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_102574

Scaffold Ga0208151_102574


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_102574 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4358
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065947Metagenome127Y
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208151_10257410F065947AGGMLKSNHMFNLEKIRSVFKRMKVDELPCVAYGTGNLSRRIGRGYFFYDYDTQSEEEVQRFHKYVQHTFYVAYVLYRTKHGVMVMSTLTFSFEQLRKYYDQFQREFPSDYLWDIPLFLRLSEKWDWQTGTVVSPMPAIIANPKQIDIYKLIREDMYPKKWYRTRD
Ga0208151_1025744F101506AGTAGMSEDVVARTRISAVEQRIQNLEAQINDIRTTQLRQLERQNYVLMLLAISLITTTINLVVLLMK
Ga0208151_1025749F099550AGGMYQLTDEIKKLLATKHKSMQIVWVPLGVLDEIAQIAEKLHLAINQTIIVLAIHALREAQPQQNNGTGHFLCPICLQEFVNGEDFLTHLKGDEDVKIKPHV
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