NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_102947

Scaffold Ga0208151_102947


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_102947 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1029475F023140N/AVFIGLVTVPVYILLKPLPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRWLYVKKGRLNTPNL
Ga0208151_1029476F021133AGGTGGMSKRDDLIRQIYENGNYVIKRICEMEPNDDMANFSATDCIIGTANTHLALWIAKEKGYPQDVVEYLENQSKQEQWHCQLHIGKSPKPYDFKVAQKHREILLKYGVYAWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELKKIVELQREYIERIFKLN
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