Scaffold Ga0208151_103790

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208151_103790

Scaffold Ga0208151_103790

Overview

Basic Information
Taxon OID	3300027937 Open in IMG/M
Scaffold ID	Ga0208151_103790 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3145
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208151_1037905	F105516	AGG	MPKALIRVLALGRLSLNFKTFRVIENERVSITDDGTVKCLGAGCSANGMFITLEADRPNARELFEALRRVRVLELEVEVSGLPRQLLSRLEFLTGSTISDNAKVKYTWHSMPGFEELALVLNDLNLG
Ga0208151_1037906	F101502	N/A	MPPKPLIMSQVSKASIIAFTVILALGLGIVVIGASEPMKPGIGAVIVLLASMACAPAYAWLRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPLARLKP

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