NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1013790

Scaffold Ga0209820_1013790


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1013790 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2020
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034112Metagenome / Metatranscriptome175N
F064518Metagenome128N
F073276Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209820_10137901F034112AGGAGMVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPQHPKVELEAIQYMNERDAVYQKILPYAKKLKVITKDVLQINVVCDLGKILQEQEVKDNVRRFLPSLIEQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVFIYSKIMSAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGEPEGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSERYMLDLQTSMLEKAMVNLN
Ga0209820_10137902F064518N/AVAESGLFNLTGFTPLESAEKAKLYTVFQYLASKAAEEKVIDEISKSKK
Ga0209820_10137903F073276N/AMSLVQLANIFEAATDAVQGLNGFSFGWPSDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLVTVQATFNISIKSEC
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