NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1021871

Scaffold Ga0209820_1021871


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1021871 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1637
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002794Metagenome / Metatranscriptome529Y

Sequences

Protein IDFamilyRBSSequence
Ga0209820_10218711F001872AGCAGGMNEFIKQVMHHSNNAMWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHPNASRKAALPFVELLCAHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTVSGSPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0209820_10218714F002794GGAGMSEGCAWNQGELTEETRQMVLEQAMTTRHEMAIFDLINQIADTSTNPHASIIRRLRAMKNSLSLEEPMPLHDVTTLDLAIKALQAHS
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