NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1034001

Scaffold Ga0209820_1034001


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1034001 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F047006Metagenome / Metatranscriptome150Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209820_10340011F076942N/AMNSKVIVTADATTNAVINVSENSEYGYIRVEQVRTMMDNNGFLKRKSISAIVPGLLADLQASGFYAGQQLDGKIVIQESLEPFNKKNPERDLKIAGDTGIVCTLGGLPIYRRTIFTLNPSVEESLINHDNIEELRSAYSKANSAALKNAAGQDFDL
Ga0209820_10340012F000716N/AMEKLKQQVRNYQLNAGKTYMQYESDGYSQYQNYLYKRALYGLNALTKEELDTMCSKKKQRILNVYKRAQRVLNVFKQQVTNQYSNYIFQTLFPKSPWTEAMVAYSEVDEKYTNTLTFKDLNIGKSDIIGIFMSEGILPKNFLSLQEAPVTLPRLKNEAKA
Ga0209820_10340013F047006N/AMKQKLKECDGCGKETVIWKNHGGFKYCKYCWSCQKAINSNSSQKPNDYKVPQVSSKRKQKDAEYLKLR
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