NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209857_1000242

Scaffold Ga0209857_1000242


Overview

Basic Information
Taxon OID3300027957 Open in IMG/M
Scaffold IDGa0209857_1000242 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12591
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067073Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209857_10002425F067073GGAGMIRCLEDKTLFLLSEGEASEEQRSHLKSCQACTERYQEIVRDLRLITQTLQREVPPLRLTTSSGSIFFRSLPIAAGVLLAIALMWGESRLWRPDSSSEQTLSGDISQFLEQVADAIFDRGSMGEVEPASSDSDLASVQVALGENCSDDCRGLFNESFAANTKSKTKAVDRPVITAKRRPIEPAMQRMVSDRTE
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