Scaffold Ga0209749_1008561

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209749_1008561

Scaffold Ga0209749_1008561

Overview

Basic Information
Taxon OID	3300027958 Open in IMG/M
Scaffold ID	Ga0209749_1008561 Open in IMG/M
Source Dataset Name	Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4162
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location Name	Espanola, New Mexico, United States
Coordinates	Lat. (^o)	35.992	Long. (^o)	-106.0797	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034035	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209749_10085611	F034035	AGCAGG	MNAQHVRVNLPYDRADLKILLRYAKAHDIEVDGRYDFGMPPRLNIWTHPQSNPGCRAESSLMFSLEFDGHSAALMSVVMMPGYDWAIFLDEMTKLERAALGYVIYGKRREERIG

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