NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209749_1009864

Scaffold Ga0209749_1009864


Overview

Basic Information
Taxon OID3300027958 Open in IMG/M
Scaffold IDGa0209749_1009864 Open in IMG/M
Source Dataset NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3780
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060548Metagenome132Y
F071903Metagenome121Y
F089758Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209749_10098642F071903AGGAGGMNRTEQAAARHEAELQEALGHLEYFKRTALALDQAMKVMAKDLQVCRKNELIWEKRIAKMQEKA
Ga0209749_10098643F060548AGGAGMSTVTNRPRQRKVTDFVDMQVFTLIKHHASEELCIDDFVAAAIKEMPGFEWKDDKIRHSVNRLEKRGRLASKYVVRSKRLCRVPYLI
Ga0209749_10098648F089758GAGGMAIVPAQPGYPGDFGKPFESEVCLRKARKLCKKGNLLKDSEGKASGTPPGLVSIVDLSHEMHRACSTLAKVLEDAGWFQVLELPGYYFPPESKEGLE
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