NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209749_1101493

Scaffold Ga0209749_1101493


Overview

Basic Information
Taxon OID3300027958 Open in IMG/M
Scaffold IDGa0209749_1101493 Open in IMG/M
Source Dataset NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060548Metagenome132Y
F071903Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209749_11014931F060548AGGAGMKIPMRVTNRPKQHRVTDFVDMQAAMLVRNHAGEELCIEDLVDAAKRDMPNFEWNNDKIRHSVDRLEKRGKIASKYV
Ga0209749_11014932F071903AGGAGGMNRTKGAAAKRQDELQEALGHLEYFKRTALALDQAMKVMAKDLQVCKKNEQIWEKRIEKLQEKA

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