Scaffold Ga0209627_1026669

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209627_1026669

Scaffold Ga0209627_1026669

Overview

Basic Information
Taxon OID	3300027960 Open in IMG/M
Scaffold ID	Ga0209627_1026669 Open in IMG/M
Source Dataset Name	Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1180
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Odonata → Zygoptera → Coenagrionoidea → Coenagrionidae → Ischnura → Ischnura elegans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	Kakamega Forest, Kenya
Coordinates	Lat. (^o)	0.2917	Long. (^o)	34.856	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076214	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209627_10266692	F076214	GAG	MESDHASEDSDAAYDVHYCSVTEAMKLITHPFYGDKKRLREFIENVDVAFELVHPNKHDILLKFVKTKITGDARSKLIVRDLTHTWALVKGILEENYAVRRTLDFYACRMFSARQEKGESVASWGSRIDEMQTELREAARRVCKPEEIQGAVRLIGHLGKACFVQGLQSERIQTIVRSRGESVLLSQAVEISLEE

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