Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000029 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000029 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	133591
Total Scaffold Genes	181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (32.04%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

133591

Total Scaffold Genes

181 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (32.04%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F032162	Metagenome / Metatranscriptome	180	N
F034466	Metagenome / Metatranscriptome	174	Y
F034827	Metagenome / Metatranscriptome	173	Y
F038565	Metagenome / Metatranscriptome	165	Y
F047507	Metagenome / Metatranscriptome	149	N
F050171	Metagenome / Metatranscriptome	145	Y
F078229	Metagenome / Metatranscriptome	116	Y
F082149	Metagenome / Metatranscriptome	113	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_1000029139	F050171	N/A	MGMFNYIKVEQDLPLNDELKALDIDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVKDSEEEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSCQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLVEWKLSIGIVKIINFLNWLQWKGVRKVIRILTPR
Ga0209400_100002914	F047507	N/A	MINLNLNLALKTTKKISKLWNWKTKTLLVGVALIVSWISCLKIGFELKKYNSITNLPNSCFVDSMIYASRCNLLLISSSDTWNSVYGFTFGYKDDKEAILGHAVCVFEYNNNLWMYDPNWGTSPICKIGDRKKYKEKIKLYINKTYPIIVIEDFMLNDWTYVQKTKKNKMNKTYQEVSIHLDEDKKE
Ga0209400_1000029145	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGFKKEDDDKWFGFKFNLRTDISFESYEYGKIFTLILFGFGVKVSKFNL
Ga0209400_1000029150	F104483	GGAG	MNKKIIDKIDLVIEDIFNLQELIDFDTSDSSEYDLDSVVSVLAEIRGRVSNQEEEVERIDLKQL
Ga0209400_1000029158	F034827	N/A	MKYNITSQDKEALTEFDQIKEGEVFSFFTPESTDRGNHAIYMKIRVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0209400_1000029159	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADAFLEKNESN
Ga0209400_100002918	F034466	GGA	MRNLLLDNYEKSLPSKRDTEDFITNFHQYRAKKKAQQKTHYGLLFACILILTMIGSIVAKQTKNNLDIQTAAGLEKCNTQLMEKK
Ga0209400_10000293	F032162	AGG	MKQNLKISYQTFGENNAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALYSLVNKINAKGRKGGLLDLAKAKAQSIVDAMGQTCFLWGASSSEGYSLGTISAEKPSDYCGAVSNGRD
Ga0209400_100002935	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPTLVAFLPDAAEVYITGIAKLIAVVSGIVFALTVKDAAVTGGTVAQTNEAKGRTNGENI
Ga0209400_100002938	F010817	N/A	LKKFVSVLALNLFLVGCATVTPDKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITYQARERYNNLISMYRIKFKKEKAIDLKEDSGIKVYKDNFNNNLYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKVLDKTN
Ga0209400_100002984	F038565	N/A	VTNKKKFNFPASLLKQIDECSFGGYILFNFSNKGEPQVYTKFDNQINAMALLYYLNTWGQSIDQLNLEATTDLIARKNEEEDSEEED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000029

Overview

Ecosystem & Geography

Associated Families

Sequences