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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1000040 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 119264 |
| Total Scaffold Genes | 98 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (43.88%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029103 | Metagenome | 189 | Y |
| F030429 | Metagenome | 185 | Y |
| F037070 | Metagenome | 168 | Y |
| F048777 | Metagenome | 147 | Y |
| F073550 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_100004015 | F029103 | N/A | MRAAVEGYTNPGGTEAYRKSSVYTDAIASILAFFLAVIILSFAGLWLWNFSVVPLFEFARPAKSIFQILGLMLFVSLIHP |
| Ga0209400_100004031 | F037070 | AGG | MSSAIPPISPLGTPKQGGSPSGPYPVMSSTTTPFFPPVCLSTHWDPTRIYSRTVPTELVPLPVDFRPYTKVCLDYRTSAPEVAAPDISDDVVFPSGGDVYPPNRYMNNIDRESLLRRLDRPLGTSDPAQYKPSEKGDMYVDGMLVPVTPKNTTRFIEELAMPQALLRSGTYHCRAEADKKNWDRSPRLFNNTTKQDRYKAPASVEPPRQNVWTNVTRCEVLPVSAHMTQSGNREWGDGTTCELR |
| Ga0209400_100004045 | F048777 | N/A | MNVSIPKWVYLVALVLIGIIIYHFTTVKSSVPLSAMAPSPIIKDGFEDKVVLDTAKDVSTHPYTTEPINNMDQYELEAVFDGEGDKQLSKAQINKMTQRYPLDWSNQPPNSSKFQSGQAKYIDSYSAKSSAEELAKPYEAIGDGNLTPPDTIQMEKNEKEILQTYAPKKANDLTTYDIDDADALMRKIYKPKGLTPTVVRKEGNVFEVVSTRQIKNKIEYEDDLDYVPASSNPNPAAGEAIINVPAVATETAAGLDPFYEPTTATRSDRADYTKWTPGLERMFAPTHKITDWIGQPQQQQ |
| Ga0209400_100004052 | F073550 | N/A | MAALEMAAGPPGTGEGIPQLHAMTLFDVRLKQDKARHKAYNQILEQALQKVAYSAVQPNQPTFVYYNVPPFVLGLPALDLKDCVVYVVHQLRNQGYEVRFTYPNLLWISWGHHEHKYLMEKNPIIQSMIPKMATQEKRKGPSLVTMRAAATGAAGAGQTLRAADYTPPAGFVETMERPSPYSRTKNLAGGISETQTKSVRFENKRDGLVNVLDELWKI |
| Ga0209400_100004068 | F030429 | N/A | MGIVWRCQDYNQSKNAVYKRLEVVAAERGLPLNINRKQWHLDSRVSDEQAQSEELRKDGLPYETSIIHNAFSVARMSLQDRHYIRSIVDSLGENAHVLHGDRILILYEADLLSTESVLLLQNLLEMRSESGNISIWLTVRETVPLKLRDWFLDIPIPMSCPHFHPWAAILWDWIQKTRALKKHDIAHVDSIRNCVYAILQRNVRWFDIHQIILELVLEHKEELGPLTTHKILECLVNSPNTATGHTLTSYRIPIAWESLFASLYDILVGTSAKGTVLPLII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |