NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000116

Scaffold Ga0209400_1000116


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000116 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66908
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (73.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F005701Metagenome / Metatranscriptome392Y
F066711Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_1000116103F066711AGGCGGMAKVNRTKFYKFVGDVFEHYEQDRSSKERTHSDNGWRLRNKKYGPTATFAKLPLTETLEQRPCPLKEGQPGIYILRDSVFPQGFYIGKGKDIYDRIWKHGVKLDGTDKWNKGVGTTENFAKYRELRLEKGLTTWDDVEVAFWFTDKFDELEDQLMGAYEAKYGMIPFCNSTEESLFQVWD
Ga0209400_100011662F005701AGGAMLTQCIAYAKLVYNKKLNSYKMQIAFNVHKELVGTNYKMRFPVQKQCNYVSGDLLADNIDAEVQRTIITAQKMLRTNNIVIVE
Ga0209400_100011664F002052GAGGMTREYVYTFRVTCAGEGTPNLTRVEELIDLSMQDLVYDDEFIVALDEKESVTIQVIPMNLDK
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