NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000483

Scaffold Ga0209400_1000483


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000483 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34742
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (84.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F003265Metagenome / Metatranscriptome496Y
F016520Metagenome246Y
F032632Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10004832F000166AGGMSNIPTPEDARFFALCVKKWQAILNLGDWRIEKGLKPAKQAMASVEFNEGARLATYRLGDFGAEQITHESLDCTALHELLHVMLHDLLAAAQDPKSSQDDIDKQEHRVINLLERLLSKDSNGVN
Ga0209400_100048340F032632AGGAMKHSKYYHYPEVKNAKLNARAAAAIDLLVVLAIGVGMAVLLVAWWSS
Ga0209400_100048341F016520GGTGGMKPTPACPKGLIEYACEVEGVDLVCFLEYIPKEEGSLDSYGLLNEPNTPENMDLVNAYVKGTDIDIGHLLMQYLVDHITSTAIEDFKHDDF
Ga0209400_10004837F003265AGTAGMRWFWLLLISLVFWANAKAPCIVTDFYALSWLGNPSERHQRLLEWLTANGDNCSSEQLAGIWNNLAAWAGTADSSELRVRVLYYYARAIEREKK
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