Scaffold Ga0209400_1000497

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1000497

Scaffold Ga0209400_1000497

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000497 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34406
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F074409	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100049739	F074409	N/A	MNNTQMISPKPARPVPCAVSVYGKEYRNHIHQPKANGWRFLFDQSTGLVMNRHGVKAKNAELVLERLKGVEINARYIDGEIMGMRTKAAKGTIILIDAFDPANPKPIAERLKLIEEIEPASYEVKANALLRMPRLDHDKLKACWAEMDYQNQKAGEVLWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW
Ga0209400_100049740	F005702	N/A	VAQDEDSLVIFGLAIFFGLLILQGVRLLAKNIDQQNYERRRFYLSVAADLDRLDKIVSEGNQPKEPELFLPSKNWAGRN

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