NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209400_1002720

Scaffold Ga0209400_1002720


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002720 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13223
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017479Metagenome / Metatranscriptome240Y
F045099Metagenome / Metatranscriptome153N
F077012Metagenome117Y
F085703Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100272014F017479AGGAGMNELKTAAGSWARAFLVAVISMAAAGVTDPKALIAAGVASILPPVLRYLNGNDSALGLKK
Ga0209400_100272018F085703GGCGGMTTIELYYTPPVERYYCLYCSFDMTETMVCTDCNEYKSAVTLQEFVEFNGHYPKLRAVN
Ga0209400_100272019F077012GGCGGMSNQEKMLLICIIGIFISMSVVAFDAYRLGKERGIREGWHRGRSLSRQEFWEE
Ga0209400_10027207F045099AGGMAKLKITFEDGKVVQGEVTPIIEYIFEQHYKIGFHKAFREEELQTQVYFLAHEVCKRSGEPVDARLETFISTLKSVEVLDSDPLS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.