Scaffold Ga0209400_1003106

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1003106

Scaffold Ga0209400_1003106

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1003106 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12237
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (84.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F009401	Metagenome / Metatranscriptome	318	Y
F077034	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100310615	F000763	AGGAG	MNMKNPLILTAGAFLSAWAASNFDADYRAILWAVLAGVFGYATPKK
Ga0209400_100310623	F009401	AGG	MAKLKVTRADGSVGEYPITPLIQYGFEIYAKKGFHKAIVEDSKMSDIFWLAWECIRRSGETVKPFGEQFIETLTLVEVLDDSFPA
Ga0209400_10031067	F077034	AGG	MGEMVIFDDESATVMGGEFEEPQTIVIYCDLCNEPLAITPESNDQVFLTCLRCHAVNAITTPQA

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