Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1003482 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1003482 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11442
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

11442

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10034821	F001915	N/A	WKLAHPMYDVADIVWMSDTFFGTEADGILKRDKAVFTKNVTIAATVQLFDKNREFIAVCRTPDERLLGFCWYDRGGYTTYASEEISNAKFHHVDLTLPAKTRVKLVHQMIDQHILWANVCGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWLRTEEGMKCLMK
Ga0209400_100348211	F004695	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVNPGVDYATAIITKCLMPNGKVNFEFERFSELDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKDVEGTRDQLRVFETMAADKGLTVKRQNMRKIDVDLAAAAQETMGGDQQDNPMESISDSLNSHTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISNIQDQDFLGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATAIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSNKHVFEFQPMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLANVCAQGKPFMDAKSMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSVMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTLEEAAKMFQAKSQQPPSPEHEEISSRTALNKAKTDETVAKTLFTQKKAEDVDTDNMFEALAAKRGKLSAVEID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1003482

Overview

Ecosystem & Geography

Associated Families

Sequences