NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1004418

Scaffold Ga0209400_1004418


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1004418 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9916
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002386Metagenome / Metatranscriptome565Y
F015970Metagenome / Metatranscriptome250Y
F030692Metagenome184N
F042184Metagenome158Y
F086797Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100441810F042184AGGMELDIDFCDLEIDIKAWVEWEYDPDYSPNEGVYDKFIWLAYLQIGNNRIDITDELSAKECKQIEKQIEESIDDSL
Ga0209400_100441811F015970AGGAGMTAFNKAVWENYQQLNDDDIMEAISGSVAIPLAIKSDDWEYAQHFIKERIENKMQRRAELALYDTIKTPSIDADEELRMLRTLWLKDEYKGNR
Ga0209400_100441814F086797AGGAGMSDSYDDYCVKMDIAERIFEDREERRNFRTETWETKDGREIAIKDMEDSHVFNAYRYSQDELLFREMVLRLFEDKIKTNKS
Ga0209400_10044183F002386AGGMKFAFIPKAQYSIGQIITVHGQPMRVESYTHTGKNVTVHSLENAPKFVRMVCICTDSPAIQGVTA
Ga0209400_10044186F030692GGAGMSDNDDKKGIVIKFDPIEYEAIRAIGEGNLSEGFRVCLRWAVHFHAIGLRSDDNLDYVGLCTVAD
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