Scaffold Ga0209400_1004675

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1004675

Scaffold Ga0209400_1004675

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1004675 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9583
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F015330	Metagenome / Metatranscriptome	255	Y
F034802	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100467525	F001915	AGGA	MEWSLADPRFDVDDIVEMADTFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDEPKTLPMYDMNGMVMGSHSVQPLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLPVRTRVRLVNEMIDQHILWAHTWGVPIVCSTSIRAEHDGFMRIHAKRGFTVNGSYAWIRTDKGMECLTKK
Ga0209400_100467526	F015330	AGGA	MSDEKVVAIKPKNPVGRPKSVVNRVTEYGALFNQLNEQHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDNF
Ga0209400_10046758	F034802	AGG	MNKLEAHELLEARKRGLSVLPSAIDHALFLTGDLGGNALVFSEGVDSPLPKEDQASWQSKGHDVVAGTGRYYGSEEWFRANHGPKAEDE

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