NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1005214

Scaffold Ga0209400_1005214


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1005214 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8973
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050233Metagenome / Metatranscriptome145Y
F053996Metagenome140Y
F057212Metagenome136Y
F086842Metagenome110Y
F095177Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100521413F095177AGGTGGMGFVPFGMERATLDDKQKIRKMLEYLGITHPAHQVEFLSALLGKPFDTTKMSRQDFMTLRSKIKNIQTEKDKA
Ga0209400_10052142F050233N/AMGIIELGQYAGALTAIALLVGMTIKWAIVKPIKAYIDQATYPIHPNTNGGRSLSDVAQTVNRIETSVKDLDYRLNSIEELVTKPATRNKKTTS
Ga0209400_100521422F057212GGALIHPDMTKIVQQDTWLIGVAGSARLCDQLQYSIEYPKPPIEVVKSGAWLKWIVTKVVPLIDYFVKDKEMDAECLLVTHGKAFLIGEDLSVLSAKPYWAIGSGADLAIGSLADRQYAADWNKNHDLSALRAMEAASMHDPNTRGTFDQYRSYTTGRVIQRGVQ
Ga0209400_10052147F053996AGGAGMRTPSEQLVQTTWMADHKLFANHDAVTPVDWAKVWEVVDNIDEAEFDADQLVLVAVLEFLCGSEMVEVSLDEIANLPDMERQAVVDALRLKWSKVELQENL
Ga0209400_10052149F086842AGGAMNKAEVGKVLAIAVSIDARLGAADEEGFRAKVEGWSLALSEAMTFEFARDAVGRHYKNAIDSLMPAHLNAMWTAYRSREHELDNVRAIGSSPKGQGMPDDVRAKLVEMGLKRP
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