NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1005222

Scaffold Ga0209400_1005222


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1005222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8969
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035280Metagenome172Y
F035651Metagenome171Y
F037608Metagenome / Metatranscriptome167Y
F068601Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100522213F037608GAGGMSNVIAFHPRKSDLVLLYEVVGEDGHAEWGGNSEADALAWIASSPTATRILVSGWESDEDDAHLVGQPLDITAIVKEASR
Ga0209400_100522215F068601GGAMRTGGSQENIVELSDIREGKLRALSPYGPVKAGLTTLPKINEEARLMELLNSLESAVDDLNFKSFTVYDTLIIAIEGVRVALLHTTTDEGGTDTL
Ga0209400_100522226F035280GAGMSEKKIAGHWWNYGRKSGFGIGFDISTYHWNIDLGFWYFGQEF
Ga0209400_10052227F035651GAGGMGHYDGDPWSNHVLNEVKCAECEEYFDDQEGEGNICPPCVTKCYGEGEKENG
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