Scaffold Ga0209191

Basic Information
Taxon OID	3300027969 Open in IMG/M
Scaffold ID	Ga0209191_1000008 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027969 Open in IMG/M

Scaffold ID

Ga0209191_1000008 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	177545
Total Scaffold Genes	187 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (8.02%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

177545

Total Scaffold Genes

187 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (8.02%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F002779	Metagenome / Metatranscriptome	530	Y
F006142	Metagenome / Metatranscriptome	380	Y
F006895	Metagenome / Metatranscriptome	362	Y
F007365	Metagenome / Metatranscriptome	352	Y
F017303	Metagenome / Metatranscriptome	241	Y
F032658	Metagenome / Metatranscriptome	179	Y
F087203	Metagenome / Metatranscriptome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_1000008109	F032658	N/A	MKNVKQFNKFDLIKEESSPRLPVDEKYWLRKGKEGKNVALYTHDDMDGIFSAIEVKKYLLNKGFTIVKYGILNYTEGWKYTTLDPKLINVVLDFASMPGDERDDMIDYYLDHHGLFNEDDLEKYKKSPVQKKKTDSGYEAVCQALGVPQDSLQLDVIDMIDAAKYDEYEVPWQRLLDFNLSEIKKSKKRRLEFGAAFNQFLKRSDTKTLISVIQNCADASIYSIFNVMKKVYPEHNAIMGGPKRGHKKDFIEDSQWRLGEMQKKTRGSMSSKKTYNTQTEFTNQFKNGQYLQMDGYQKIGNLVFVPTGTWANALRARVIVEKDFADGVLDSEPNFILLQYGSTLQVCAYKKINTIENLPTLKGSKVVDDLGKYMTELLKNFQKHLGYHNPDTTLGQDEITVSGGHGGIGSISNIYGKSGEKTGSEDDKIVELTLYDGLKYVDMFKNKIISDLSGVPFNLSLKWSEPAEHFNPKSPDMDNKVIATKDVTKLDKQGNLIKSFENFKSR
Ga0209191_1000008112	F002045	N/A	MEFFCVYCKTRKKFDKFVKVNAIKNKYIIDINKIISEEEVDFTDDKTYLKILIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEVMDDVFSNLSKFSNSQIIRDY
Ga0209191_1000008168	F087203	N/A	MILSREINVKITESNYNYYDDLGYDVYISEEIIIPVELLPKGSHYKIKCKCDSCGIEKEVIYKNYLKYDNDWGDYYCRKCSEVKRKETLRKNFGVDYPIQNKKVLEKMKNTLVQKYGVDNISKNKKKLNNE
Ga0209191_100000818	F007365	N/A	MSSLKEFSIREYISKIDFVNDDWKISQIKEDMRRFLGEEPGIDVIYKKDVMVNEFSGEAKEFVDVDKIQIVFTDTDDKFKKIEFVVGQKL
Ga0209191_1000008181	F002779	N/A	MKNLKLELFNFKKDLSLDQEEISTIVEGHMNACNQHSEKTIITSLNERLKPYTYDKGVKVLLEGLNDDMAAFELLYELKNLYGVLNTRNQGELYRQPINVLLQTINLESDQDRMSKILNELAIYDWVPEIKVFVHNLTKSPEKRSNLLSGGSGESIFTVVEQVEEGHVALVRDSWFLLTENSIEKTLLENHIKDETALRSLRTLETAMKYSTVTESRINFRISEYLTIGLSVGKKSGLFINDDELNEETTLESLFNSPIIPIVNKNFYPVLLETSKNLDKFVELDVVKRVNNLVNPYLEVFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFYENKLSKELIVKRKLEDKEREISLKLEDVEFNIDKVKGSLKMIGESEVLTTALSNLEKRQANLSTELSAVKELQYKERIKG
Ga0209191_1000008182	F006895	N/A	MIGDRFNFEDVFFRDLTVCVLDTLEGQVKWVNRFTSGDKFVEVPFYYSMTGDERFLLDTFTDDIVSGDSTGNGRYLELNTDIIPRGHLTMKSFAIRSDEFANPNVWLRTVVENEVEIKKVLGRIRAVPVTVSYDLVITLSSEIDSFKCSQAIMDTLWIYKFMYFEHNFMNIDAVILMPDSNSIEMTRDKNLTSDNSIKMTVSFEVQTYYPAFRRDRVDFPGYTKENGGMSDMNGYTLEGGYSDFFNNVRGGSTAGEPNSGFFVTPKRTRWFNNILRAREQSSRRYDNPNGDLGNNKK
Ga0209191_100000873	F006142	N/A	MKRQNKLILEFTEFNLQRMNSDSVQASTHVDDPSLSINAFDKNQDMIRQAMSRINDIMYNLKGTNAYKALRSKLALEEQDIKRLKVLRIVKSTSLKYDIYIAFTIGEEEYWGVLEDMMSGSPDFTSEVFKDADLYQPKEWIIKIKGLIVKTLKTWLKPDPGMYRLLNDEVLCYSVETGKQLRMEKGIEIELIRSHNDKIVIKHNSDIYNLVGDNYVYFNWWFEKLEE
Ga0209191_100000877	F017303	N/A	MSMIIKNQQLTNDTIGALNTLIELDINATIAFRLTRIIKELSSIVEDKLKMEKKILDKWVEKGEDGNPVVPTGQDGNPIEGTVNITNVDEFTKEMTQLMEIETEIPFQKIDFEDLGLTTAKVKDLIKLEFLFN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209191_1000008

Overview

Ecosystem & Geography

Associated Families

Sequences