NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1000228

Scaffold Ga0209191_1000228


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000228 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45113
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011368Metagenome291Y
F019831Metagenome / Metatranscriptome227Y
F071147Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_10002283F071147N/AMVDLLAKRPYNKHIHKHLHKGNTMTTNQAMFVFISGLILVLGAVGGVEASVDAEQLTGSLMLAVLGLLAMYAGTLGFRNADYFDKG
Ga0209191_100022849F019831N/AVQRRTHLKQTQSQPLLQQSKFDLEDSDLIIDDEVTFGRNRRSQEFGKVVQDDELSDYVKFRLWLARQRAMAAYKKAHA
Ga0209191_10002285F011368N/AMNYTLQHRDIAGAELSPGDHCIVTEHNRIILARVIKCYDSSNQVQLQPLNSSAGNRRSKPSQKQIRRECYNVYRIADTEITMSILRGAV
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