NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1001223

Scaffold Ga0209191_1001223


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1001223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17224
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004639Metagenome / Metatranscriptome429Y
F032196Metagenome / Metatranscriptome180Y
F103158Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_10012231F032196AGGAGMFNLEDYETVEERLVKFWKDHPDGQIHTKLLESTASRFIVEASIFRTEADL
Ga0209191_100122327F004639N/AMEATGETLMGYIQFLNQDGEWEEFPNEEQRANLRANAELLEELGYKLICQLCNKFPNRSQIRTRYLKHEWTCEECGTVNSAGRA
Ga0209191_100122333F103158N/ARRSGFAVDLCLAIITDPGAYPDWILPALPNRIDNIPYEDDDED
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