Scaffold Ga0209191_1002411

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209191_1002411

Scaffold Ga0209191_1002411

Overview

Basic Information
Taxon OID	3300027969 Open in IMG/M
Scaffold ID	Ga0209191_1002411 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11617
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F031763	Metagenome	181	Y
F082232	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100241118	F011292	GGAGG	MTPNSFDIDTCKEVVGDDRMRVIEAKARQDADNGVTQKFQPAKEAYWDKVRSIMEYVIYMTAHKKRMERVARIKEREKNT
Ga0209191_100241119	F031763	GGAG	MKLYGYVWTKDKHEPKFFWTESPAREIQKNFGGEVVAVYK
Ga0209191_10024116	F082232	AGGAG	MSEKHWMDEEDGVPHKNGMVRFYVVGVNEYVHGYLGWFDMTDWDEGWKKVWKAAEEKVNEGDDFRVLRHDQVLDLISNAQSALEEALEDKDETTWVWWLRKKWKEEEEAKLKGEVK

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