NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1002538

Scaffold Ga0209191_1002538


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1002538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11278
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002869Metagenome / Metatranscriptome524Y
F024781Metagenome / Metatranscriptome204Y
F050374Metagenome145N
F092063Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_100253814F050374GAGGMIDYKFIGWKNKDGSDKVWGAIYMEDRTKMRPKVLIFWGRRGHKLQTKMDREGWDLDKLITSKKEKGYKTLMDYELKQVYPEFLNDLEKTTMWALLKL
Ga0209191_100253815F002869GGAGMTKEITVEMLDQTIQWCEQNAFWGRGSAIHRMQDFYYEKTRSSVKEDWPESFTFQELAKILGEEQIRYRIYYSKDNLTLRLFVFRPRCTHSEEKLMLGLGFTFASDGDTENIPDQPIEVE
Ga0209191_100253817F024781GGAGMIEIFIPVLFVCLNDNCNFMQAQTVYKSEVQCRASIDNQKAYLTDMANQADQPKMTILEGTCINTKIEKPEIRT
Ga0209191_10025383F092063GAGMSKMAELDLCIRDMLEEGYNPVSISVQLGIPVHFVYDILEDDQYGEELSPFNTVNS
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Institute for Fundamental Biomedical Research
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