NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000230

Scaffold Ga0209401_1000230


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38162
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F003329Metagenome / Metatranscriptome493Y
F017969Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100023018F017969AGAAGGVIQVIYIPVLFVCLNGNCDFAQSMKYFTREVECRAALESQKENFRKMSLKGGQMITQLEGTCITLRNGML
Ga0209401_100023038F000952AGGAGMATSDAEQKSVNVPQHKRMAMGVPITGQSMQTKGENQPAKPQGGLSQAKKK
Ga0209401_100023049F003329AGGAMAYSGTTGTTVITVQTLIDHGARRCGKLAEELTSEQVLSARESLFFLLSNLINIGIQYWAIDKKVYGFTADKYIYDLPLGGNDVLNALYRYLDRPNGSYTS
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