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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027971 Open in IMG/M |
| Scaffold ID | Ga0209401_1000271 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35533 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (22.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005050 | Metagenome / Metatranscriptome | 413 | Y |
| F028725 | Metagenome | 190 | Y |
| F034061 | Metagenome | 175 | N |
| F061497 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209401_10002712 | F028725 | AGAAG | MPHKWLHLFNRWNQKQTSYNLVKVFTKDGYDYLRFPKETNMPLERFSMSMALLERLSSGISGSEMEGILEGMEKALAAGLSNPKNAALVATYIHIIRERQDTIIHRDLLLNIAATWIIRDDEDPTIINNDIHKEKLEVFEKMCMEGSHDFFTRLGIEPLIPLMSMSAEDMQKLWVYNVEAQRNLIKALTHLDSLHDTERVKRPRELKLK |
| Ga0209401_100027137 | F061497 | N/A | MIDITLEGGFVTFYSSLIGAIASNVESVEVVDDMSVHLGTNVGVFLINVNQFTFNSIKFTNSTKAYTYITNN |
| Ga0209401_100027140 | F034061 | N/A | MCFEKLVGLKGCQLSEPSTGLYIDDLGINTTLLGQLITDQYNTGVELFEGKRAFAWRKLSSDILTRLQATMKADTIIENKRIGQVLTNASNVDLALGAGRYAGIRVKIDPNNTSFLNFYLSQLQIDIYTMATPVEILVFDMTTLKLIDSFDYQSEAVEEFIGRTFKAKRRKLDLAFVYESLYDTTKMITKKGACTDCGGRLKEAHICPFVDAIGIELTTDGLNVTSSLSKKYTQGMSFVYNVNCDRESWLCSIGGLMAMPLAYATAVEIFNYALTISPNQRVNTAVSVNKGNKVFATADATEGIVAARDIAATRYNEELSAMLTNMRLPDDRHCFDCNKNYKYVTALP |
| Ga0209401_100027147 | F005050 | N/A | MGCASYCESGLEAHDLVACGEYKLGGVSAIIIGACGATLVDPTSPEEIEEMLISGDAVLVEDIRFSLPAGSPIQVDSPVGCGTQIRINEDRTATLYDANVTDQNNSFYNSLNAQKVGWIMAYLCDSGKVIYIDPPVGITTSANFIIPEQNNELQRYEVTFSWRQKEIPTQFTAPAGLFN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |