NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1001776

Scaffold Ga0209401_1001776


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1001776 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14156
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048854Metagenome147Y
F050233Metagenome / Metatranscriptome145Y
F057212Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10017762F057212N/AMTTIITTSGNNSTTLVADRGITSDLIHPDMSKIVQQDSWLIGVAGNARICDQLQYLIEYPKPPDDVVKSGEWLKWIVTNVITLIDDVLKDSEMDAECLLVTHGQSFLVSENLSVLSAKPYWAIGSGADLAIGVLANSQYNPDWNKNHDLSALRAMEVATMHDPNTRGTIDRWVSHPAGNVIKSF
Ga0209401_100177621F048854GAGGMETTPKENKDNLIALRLNNEQMLAVRQWAHQHGTNVSTVIRSAIELMTGAKQ
Ga0209401_100177629F050233N/AMGIIELGQYSAAITAILLLVGIGIKWAIVKPIKIYIDQATYPIHPESNGGRSLADVANTVNRIEIKLHNVDDRLIAVENLVTKPPTRAKKSIN
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