NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1002699

Scaffold Ga0209401_1002699


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1002699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11398
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005050Metagenome / Metatranscriptome413Y
F070850Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10026998F005050N/AMACVSYCDTSLLEHDLVLCNEYKLGGVSAIIVGSCGTELVDPSDAVEVDALLEAGTARLISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGNNTFWNDVNNRRISWILAYMCDSGKVIYITAPVGITTSANFILPEQNNELQRYEVTFSWRNKSIPAQYDAPAGVFS
Ga0209401_10026999F070850GGAGMSSEATNPIQSITPTTGVVLLAFGKVQYYWAAYNLAFSIKKFNPTINIALIVDDRGKAFSQCPELHNCIDYVSDIAQGDIYTNNKLDPAKLKVKLYDYLPYERNLYLDVDAVALKDIQPMIDELNQSGKDYISHTVGYHTIDKGRDFKAMQWAWADKIWAHYQLPADTIMPAINSSMQWIVKGEKAAAIYSKAQKLYFDNPIPLKDLRMKWGGSQPDELYMNIAMAILGVDPALKVYEKIKGSEGGMIHFAMTRDLTFQEITANYYLQSYYGGAGFTPNFYIDWLDRMLKADHQAIGKRHIYYINRISQNKFADGKR
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