Scaffold Ga0209401

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1003916 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027971 Open in IMG/M

Scaffold ID

Ga0209401_1003916 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9289
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9289

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015449	Metagenome / Metatranscriptome	254	Y
F044969	Metagenome	153	N
F057981	Metagenome	135	N
F058791	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100391614	F058791	N/A	IVANAQISGEQARTAGIGSVAGFNINMYSAVPSNSITLGGFFAQREALLIAARVPEVPTGVPIPGTIDTVTEPRTGLSVQVRENYDVVKGMLQRTYALIYGVKAGETNSLVRINGS
Ga0209401_10039162	F044969	AGG	MSASLTVDASKLQKAMKAFIGNTKAEAAKEMRIQARMLCVSLAKSTQPFGLGNDVKKVGEKAVTRDIDRVYKSAGSASKDIAKLSLPSGKTKTQNAEQMAKALASLVLGKTGGSKRRRTESAQQLLNRIRQQPYVGTQVGPFDGGKNHESARYGKSKRVPKNQFVRQIVTKDNPLARYFKDKRGNVGIAKSGWAVCAGLLGGFRGIPKWVYRHTGGGRVNDKSQTGLGTFSKPYVQMTNTIPWINNVISSGTIQKSIDIQVLKMIKRLSIIANYESKKAGL
Ga0209401_10039164	F057981	N/A	MTEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLMDWIADMTEDDRNTASVMCSAILAEANKARVNVIPSAIAAPPGNA
Ga0209401_10039165	F015449	GAG	MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFSTGGDQDAKAEMERTWVDMKSEPEAAIRYVRAALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209401_1003916

Overview

Ecosystem & Geography

Associated Families

Sequences