Scaffold Ga0209401_1012282

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209401_1012282

Scaffold Ga0209401_1012282

Overview

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1012282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4678
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F033806	Metagenome	176	N
F089589	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_101228212	F089589	AGGAGG	MSNRLWVDDNGTVVCDEHAGAYLRSGFEANNQAIQHHTPLGTWCAYYTNLLGGADLVCEVCTPWNSPDHPYNKIKAGA
Ga0209401_10122824	F015731	AGGGGG	MSVEIEKGVIDFDVNTAAWLEQYKSALAKIKELQEVADVARAHIEQALGESETGMFLNRPVVRWTRVESKRFDTKRAREILPEQVISALEVLSVSRRFTLVSEDD
Ga0209401_10122828	F033806	AGG	MIFKKQPREPLFSIHNHSDGHIALYLEEQDAVKDLVQDVVGAYPLDDIDLLKHSADRSVKSENYFEHLDNARDNLEEHAPLLATMTEDEALILAEDLIRAVKFGRISREAGNNYPALKVV

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