NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1041845

Scaffold Ga0209401_1041845


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1041845 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2133
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F003304Metagenome494N
F011918Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10418453F003304GGAMRKALVTQAFGDEWKKILELTQPRMEAYCKRHQIDFIALEKPLTEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYKDAMCIHYAGQSADLVKLAELIKADDAKLVELGR
Ga0209401_10418455F002009AGGAGMTPPTIAEMGDEAAAITWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0209401_10418456F011918N/AVLGSNDSEYIKHHQWDEEELYQSGIAFCAMQKVWSWVKNYTPPGMKL
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