NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1126331

Scaffold Ga0209401_1126331


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1126331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015463Metagenome / Metatranscriptome254Y
F068762Metagenome / Metatranscriptome124N
F093166Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_11263311F015463AGGMQFNTWLKWSACVVTLAGALCTGLRIDPANIYLLNAGAVLYLTWGYRIREWNLVAINSGLLIIYLYGLYLS
Ga0209401_11263312F068762N/AMLRQQDLYHLYAGIRERLHEIMIERHADPLQGEIRRAMAEELLEYLHGTERGLKTMHDYKEQWTKGEDAV
Ga0209401_11263313F093166GGAGGMKIKTKGKMTQHEILASTIWDLKRDYTQMDEKDVAYDLGYIMGLCNSLGRTKLSDMVLNRFEQYAF
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