NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209079_10140955

Scaffold Ga0209079_10140955


Overview

Basic Information
Taxon OID3300027972 Open in IMG/M
Scaffold IDGa0209079_10140955 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009398Metagenome / Metatranscriptome318N
F055672Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209079_101409551F055672N/AIYAALPLTAPATWVPTLTDSGGGRTFEITVNMARHTAIGFIETFTVDLTINSVSGAATGDLRLSLPDPVTYDAALAIWLDNATNQAKTAVIGKAVGGTSYAALYHYDNGDSTSLAGQLQATSRIVISGTYFTA
Ga0209079_101409552F009398N/AMTIIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAY
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