NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000209

Scaffold Ga0209298_10000209


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000209 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37582
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (67.21%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002009Metagenome / Metatranscriptome604Y
F002149Metagenome / Metatranscriptome589Y
F002826Metagenome / Metatranscriptome527Y
F003962Metagenome / Metatranscriptome459Y
F004760Metagenome / Metatranscriptome424N
F014827Metagenome / Metatranscriptome259Y
F019450Metagenome / Metatranscriptome229Y
F020665Metagenome / Metatranscriptome222Y
F020886Metagenome / Metatranscriptome221N
F024501Metagenome205Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000020912F002826N/AMQVEARDRLKWAREILSIARNKLVIERDRATHGHAIDMIQIITMVDAASLVCKEVAGEE
Ga0209298_1000020917F003962N/AVGLNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTDQVKRLSGFFETHQKALQSLHDACPEAFDSDEVDES
Ga0209298_1000020919F024501GAGGMKHPKQLDEAGITESYLRKLAKKEGVSYKRTVQIAMEQWGEYSLKLINKIVGEGIKTR
Ga0209298_100002092F002009AGGAGGMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLLKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSIDHLERALVRCLFTLAQIKKEVTRL
Ga0209298_1000020923F019450AGGAGGMANTKHSYAVYNSVGQFFARFTSYARALRWAQREGMEWSAIIRKEREGTK
Ga0209298_1000020930F014827N/AVLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNRKAIDSDLPGESWWLRNNDTSNPDNGGS
Ga0209298_1000020938F004760N/AMPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK
Ga0209298_1000020944F020886GGAGGVSLDEVSDLRDRVANVSERLVRMEERQMTLYSMIERSLAFHGDVANRLGALETLKTKVLAVAGLIGLACSMAWDVLKNRLSN
Ga0209298_1000020948F000635N/AMTLSEIAQFAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVSYNDAEVDPIDLATIISQDPGLLDDTRTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQTALDDELRLPHVHHLVLALTHADALERERQYAKAQSITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0209298_1000020950F002149AGAAGGMTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVRDNDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLGGLLLLLAERFGPRKRITFNRSGKPRSYDYMSFMRKALR
Ga0209298_1000020953F025460AGGAGMAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLSGIGQTISNEQSLQNEDIETQRAELNDRLKDLQKKRVKQEIEIAKGDRRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYKNKLAELGFNRQAGQMETNVPDYQSEAMPLQAAPQATPQVAPETTAQAPAQPEAPKNFKSLQEAKAAGVKPGQLIYINGKPGRLQARQ
Ga0209298_1000020956F030376GAGMKTIITMTLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDSTFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0209298_100002097F020665AGGAMRKRKGKSIKLVKTEEYKAVKIFVNVDDDLYEALAEAGKQHILKDKTACFEYALNKALLELCEEVK
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