NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209298_10000298

Scaffold Ga0209298_10000298


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33472
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (79.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010236Metagenome / Metatranscriptome306Y
F022817Metagenome / Metatranscriptome212Y
F050982Metagenome144Y
F078654Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000029815F022817AGAAGMSKSSKHYLPNGKEYMGATHKMDGQIHTGAKHTASSKVLKHTKPKKK
Ga0209298_1000029817F010236AGGAMKKAQDIVGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAACATVVQKLAQASLDGKLTMEEINSAFGAKSEK
Ga0209298_1000029820F078654GGAMTDYAVVLTRRYQGKEWTTVGGEYTDILWHSEGTKPSKSVLDGLWASVQQEIADEPAAKLAAKQAVLDKLGLTADEVTALLG
Ga0209298_1000029824F050982GAGGMSQYFAQVTNGVVTDVAVVTAEFMAANPDRYEGTWHETFFDTAGKTYAGIGYTWNGVDFVAPIVEEPV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.