Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000940 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000940 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19408
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (51.85%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19408

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (51.85%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F024499	Metagenome / Metatranscriptome	205	N
F044969	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000094012	F044969	GAG	MSASLTVNPAKLQKALNAFVGSAKLEAGKEMRIQARMLCVRLANATQPFGLNSKAKMLGEKAVTTDIDRVYKSGATAVREIGNLPLPRGKTKTQNAKQAANALAAIILGKTFKKGKKAAQTHGTARELLGRINHKPYIYTEIGTFDRGAKHQSARYGRSKRVPKNQYVRQVVTKDSDLAKYFKEKRGNVGIAKSGWAVCAGILGGFKPIPKWVYRHTGGGRVQDRSQTKAGVFSKPYISMTNTVPWISNVISKSTVQRSIDIQVINMIKRLAKIANYERKKAGL
Ga0209298_1000094016	F007911	GGAG	MPAVTMLDRLIEAAFRELLTATVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKVMQAFYDSSPLATRLNATTAIGSARCYNAKLESVEPEADDEERTMRRTYKLAVIAYPNSVAS
Ga0209298_1000094020	F024499	N/A	MSEFTECLKESLAALYTQTGTAATIGSAGVTGILSTITRKENVELGGFDLDLNSTFTIGVSSISSAPTIGSILLANSVSYRVASIDTSIGSYVLGLREV
Ga0209298_100009403	F006891	N/A	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTLWELLKRRLSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000940

Overview

Ecosystem & Geography

Associated Families

Sequences