NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10001505

Scaffold Ga0209298_10001505


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10001505 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15111
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F015449Metagenome / Metatranscriptome254Y
F024499Metagenome / Metatranscriptome205N
F041639Metagenome159N
F044969Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100015051F041639N/AMGRRPNTAILAQAAATGVGLRQARRQLEKGQAVAPAKPMKPIAGIGLDGEIDRLESLAATLGEAAKEASGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL
Ga0209298_1000150512F007911GGAGMPAVTMLDRLIEAAFQELLTTTVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKVLQAFYDSSPLATRLNATTAIGSARCFNAKLESVEPEADDEERSMRRTYKLAVIAYPNSIAS
Ga0209298_1000150514F015449GAGMVDSFWGTTNIKVAAAASAFGAKLRPMDPVTCIVKEDGHRQFTFWFTISEGDEAKAEMERTWAEMKSDGESPIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSERASPELKRAMLKKL
Ga0209298_1000150516F044969GGAGMSASLTVNPIKLQQAFKAFTGNMKIEAAKEMRIQARSLCVSLANSTQPFGLNPKAKAIGEKAVTRDIDRVYKSTLTAVREIGSLPLGRGKTATQNAKQAAAALAALVLGKSFNKGKKGVAAKSEAQALIDRLNYKPYVYTKIGDFDKGSAHENARFGKSRRVPKNQFVRQVVTKETELARYFKQKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVEDRSLTKAGAFSKPYISMTNTIPWISNVISKSTVQKSIDIQVVKMIKRLSIIAAYQSKKAGL
Ga0209298_100015058F024499N/AMSEFTECLKESLAALYDQTGTAATIGSSSVTGILSTITRKESVELGGFDLDLNSTFTVDVANLATAPTIGSILLANSVSYRVASIDTSVGSYVLGLREV
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