NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10001647

Scaffold Ga0209298_10001647


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10001647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14428
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000164711F085382N/AMSIYDTFLPDFQIVLADIGVPATVGSDLFLVGLSRPMNTPRFEAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATVVSGVPAAFLAEGKKLTVNGQVLRIKGQAYKQASAVIELDCIDDNQ
Ga0209298_100016479F082694N/AMGTKSARQIIEAAIASHLSAQTELSGMSIYTGDGADTNVLPKAIVLCDSARAPNGMPQGLGNYSCGTRITVFSSADDNTLVEHRARCAAVAGAMQDLAAIQAIFVAGGDALCYDVTPQSEDEGVNERSWASVFGYDILIVVNPV
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